Wednesday, June 4, 2014

installing tabix on mac os x

first install homebrew (brew.sh)

copied following command into terminal

ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"


Tuesday, June 3, 2014

scg3.stanford.edu scg3 scg cluster

Rocks 6.0 (Mamba)
Profile built 16:27 16-Aug-2012
Kickstarted 16:32 16-Aug-2012

Welcome to scg3 login node!

2012-01-09 h_vmem request is per slot, not per job

https://web.stanford.edu/group/scgpm/cgi-bin/informatics/wiki/index.php/Scg3_user_guide

This system is for authorized users only.

2014-03-20 imposed new ulimit values on this machine 
           check ulimit -a: about 3.7G max memory per process
2014-05-08 scg3-ln02 is up, use that if this one feels slow
2014-06-02 5PM clean ln01 reboot, sorry for inconvenience

It appears that you have not set up your ssh key.
This process will make the files:
     /home/jmtoung/.ssh/id_rsa.pub
     /home/jmtoung/.ssh/id_rsa
     /home/jmtoung/.ssh/authorized_keys

Generating public/private rsa key pair.
Created directory '/home/jmtoung/.ssh'.
Enter passphrase (empty for no passphrase): 
Enter same passphrase again: 
Your identification has been saved in /home/jmtoung/.ssh/id_rsa.
Your public key has been saved in /home/jmtoung/.ssh/id_rsa.pub.
The key fingerprint is:
16:72:7b:4a:c5:f3:eb:c7:85:8a:cc:87:48:f4:db:d8 jmtoung@scg3-ln01.local
The key's randomart image is:
+--[ RSA 2048]----+
|                 |
|         .       |
|      . o +      |
|       o.+ o     |
|       .S.. .  . |
|       o.o.  .. .|
|       ..+ B.o . |
|        . B.E o  |
|           ...   |

+-----------------+